Proceedings of The 2009 International Conference on Bioinformatics and Computational Biology in Las Vegas, NV, July 13-16, 2009. Recent advances in Computational Biology are covered through a variety of topics. Both inward research (core areas of computational biology and computer science) and outward research(multi-disciplinary, Inter-disciplinary, and applications) will be covered during the conferences. These include: Gene regulation, Gene expression databases, Gene pattern discovery and identification, Genetic network modeling and inference, Gene expression analysis, RNA and DNA structure and sequencing, Biomedical engineering, Microarrays, Molecular sequence and structure databases, Molecular dynamics and simulation, Molecular sequence classification, alignment and assembly, Image processing In medicine and biological sciences, Sequence analysis and alignment, Informatics and Statistics in Biopharmaceutical Research, Software tools for computational biology and bioinformatics, Comparative genomics; and more." Recent Advances in Computational Biology are covered througha variety of topics Both inward and outward research were covered during the conferences Some of these include: Gene Regulation, Gene expression databases,Gene pattern discovery and identification and Gene network modeling and interference INDICE: Part I: Bioinformatics Databases, Data Mining, and Pattern Discovery.- A Classification Method Based on Similarity Measures of Generalized FuzzyNumbers in Building Expert System for Postoperative Patients by Pasi Luukka.-Efficient Support Vector Machine Method for Survival Prediction with SEER Data by Zhenqiu Liu, Dechang Chen, Guoliang Tian, Man-Lai Tang, Ming Tan, and Li Sheng.- Searching Maximal Degenerate Motifs Guided by a Compact Suffix Tree byHongshan Jiang, Ying Zhao, Wenguang Chen, Weimin Zheng.- Exploring Motif Composition of Eukaryotic Promoter Regions by Nikola Stojanovic, Abanish Singh.- Large-Scale Analysis of Phylogenetic Search Behavior by Hyun Jung Park, Seung-Jin Sul, and Tiffani L. Williams.- Silicosection and Elucidation of the Plant Circadian Clock Using Bayesian Classifiers and New Genemining Algorithm by Sandra Smieszek, Rainer Richter, Bartlomiej Przychodzen, Jaroslaw Maciejewski.- ChemBrowser: A Flexible Framework for Mining Chemical Documents by Xian Wu, Li Zhang, Ying Chen, James Rhodes, Thomas D Griffin, Stephen K Boyer, Alfredo Alba, Keke Cai.-Experimental Study of Modified Voting Algorithm for Planted (l,d)-Motif Problem by Hazem M Bahig, Mostafa M Abbas, and Ashraf Bhery.- Predictionof Severe Sepsis Using SVM Model by Shu-Li Wang, Fan Wu, Bo-Hang, Wang.- Online Multi-Divisive Hierarchical Clustering for On-body Sensor Data by Ibrahim Musa Ishag Musa, Anour F.A. Dafa-Alla, Gyeong Min Yi, Dong Gyu Lee, Myeong-ChanCho, Jang-Whan Bae, and Keun Ho Ryu.- On Quality Assurance and Assessment of Biological Datasets and Related Statistics by Maria Vardaki and Haralambos Papageorgiou.- Pattern Recognition Informed Feedback for Nanopore Detector Cheminformatics by A. Murat Eren, Iftekhar Amin, Amanda Alba, Eric Morales, Alexander Stoyanov, Stephen Winters-Hilt.- A MLP Neural Network for ECG Noise Removal Based on Kalman Filter by Sara Moein.- Discovery of Structural Motifs Using Protein Structural Alphabets and 1D Motif-finding Methods by Shih-Yen Ku, Yuh-Jyh Hu.- Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies by Yuichi Kodama, Eli Kaminuma, Satoshi Saruhashi, Kazuho Ikeo, Hideaki Sugawara, Yoshio Tateno and Yasukazu Nakamura.- Part II: Microarray, Gene Expression Analysis, and Gene Regulatory Networks.- Comparison of Microarray Pre-Processing Methods by Kabita Shakya, Heather J. Ruskin,Grainne Kerr, Martin Crane, Jeremie Becker.- A Robust Ensemble ClassificationMethod for Microarray Data Analysis by Zhongwei Zhang, Jiuyong Li, Hong Hu, Hong Zhou.- k-NN for the Classification of Human Cancer Samples using the Gene Expression Profiles by Manuel Martin-Merino.- The Application of Regular Expression Based Pattern Matching to Profiling the Developmental Factors that Contribute to the Development of the Inner Ear by Christopher M. Frenz & Dorothy A.Frenz.- Functionally Informative Tag SNP Prioritization Using a Pareto-Optimal Approach by Phil Hyoun Lee, Jae-Yoon Jung, and Hagit Shatkay.- KMeans-GreedySearch Hybrid Algorithm for Biclustering Gene Expression Data by Shyama Das and Sumam Mary Idicula.- Robust Stability Analysis and Design Under Consideration of Multiple Feedback Loops of the Tryptophan Regulatory Network of E.Coli by A. meyer-Baese, F. Theis and M. Emmett.- FM-GA and CM-GA for Gene MicroarrayAnalysis by Lily R. Liang, Rommel A. Benites Palomino, Zhao Lu, Vinay Mandal,Deepak Kumar.- Part III: Protein Classification and Structure Prediction, andComputational Structural Biology.- Novel Features for Automated Cell Phenotype Image Classification by Loris Nanni, Sheryl Brahnam, Alessandra Lumini.- A Relational Fuzzy C-Means Algorithm for Detecting Protein Spots in Two-Dimensional Gel Images by Shaheera Rashwan, Talaat Faheem, Amany Sarhan, Bayumy A.B.Youssef.- Assigning Probabilities to Mascot Peptide Identification Using LogisticRegression by Jinhong Shi and Fang-Xiang Wu.- Genome-Wide EST Data Mining Approaches to Resolving Incongruence of Molecular Phylogenies by Yunfeng Shan andRobin Gras.- Building a Parallel between Structural and Topological Properties by Omar Gaci and Stefan Balev.- GNCPro: Navigate Human Genes and Relationships through Net-Walking by Guozhen Gordon Liu, Elvena Fong, Xiao Zeng.- Small-scale modeling approach and circuit wiring of the unfolded protein response in mammalian cells by Rodica Curtu and Danilo Diedrichs.- Random-walk Mechanism in the Genetic Recombination by Youhei Fujitani, Junji Kawai, Ichizo Kobayashi.- Critical assessment of side chain conformation prediction in modelling of single point amino acid mutation by Anna Marabotti and Angelo Facchiano.- Temporal Anomaly Detection: an Artificial Immune Approach Based on T-cell Activation, Clonal Size Regulation and Homeostasis by Mario J. Antunes and Manuel E. Correia.- An integrated methodology for mining promiscuous proteins: A case studyof an integrative bioinformatics approach for Hepatitis C Virus non- structural 5a protein by Mahmoud M. El Hefnawi, Aliaa A. Youssif , Atef Z. Ghalwash, Wessam H. El Behaidy.- Enhanced prediction of conformational flexibility and phosphorylation in proteins by Karthikeyan Swaminathan, Rafal Adamczak, Aleksey Porollo and Jaroslaw Meller.- Why are MD simulated protein folding times wrong? By Dmitry Nerukh.- Automatic TEM image analysis of membranes for 2D crystal detection by Argyro Karathanou, Nicolas Coudray, Gilles Hermann, Jean-Luc Buessler and Jean-Philippe Urban.- High Performance Computing Approaches For 3D Reconstruction Of Complex Biological Specimens by M. Laura Da Silva, Javier Roca-piera, Jose-jesus Fernandez.- Protein Identification using Receptor Arrays and Mass Spectrometry by Timothy R. Langlois, Richard W. Vachet, Ramgopal R. Mettu.- Part IV: Comparative Sequence, Genome Analysis, Genome Assembly, and Genome Scale Computational Methods.- Assessing Consistency Between Versions of Genotype Calling Algorithm Birdseed for the Genome-Wide Human SNP Array 6.0 UsingHapMap Samples by Huixiao Hong, Lei Xu, Weida Tong.- An Overview of the BioExtract Server - a Distributed, Web Based System for Genomic Analysis by Carol Lushbough and Volker Brendel.- A Deterministic DNA Database Search by A. Kheniche, A.Salhi, A.Harrison, J.M.Dowden.- Taxonomic parsing of bacteriophages using core genes and in silico proteome-based CGUG and applications to small bacterial genomes by Padmanabhan Mahadevan and Donald Seto.- Analysis of Gene Translation Using a Communications Theory Approach by Mohammad Al Bataineh, Lun Huang, Maria Alonso, Nick Menhart, and Guillermo E. Atkin.- A Fast and Efficient Algorithm for Mapping Short Sequences to a Reference Genome by Pavlos Antoniou, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis.- Sequence Analysis and Homology Modeling Gallus gallus Glutathione S-transferase (Q08392) by Patchikolla Satheesh, Allam Appa Rao, G.R Sridhar, Kudipudi Srinivas, Chandra Sekhar Akula.- Toward Optimizing the Cache Performance of Suffix Trees for Sequence Analysis Algorithms by Chih Lee and Chun-Hsi Huang.- Towards a Visualizationof DNA Sequences by David Cox, Alan Tharp.- A practical approach for computing the active site of the ribonucleoside hydrolase of E. coli encoded by rich by Anthony Farone, Mary Farone, Paul Kline, Terrance Quinn and Zachariah Sinkala.- Part V: Drug Design, Drug Screening, and Related Topics.- Addressing the Docking Problem: Finding Similar 3-D Protein Envelopes for Computer-aided Drug Design by Eric Paquet and Herna Lydia Viktor.- Simultaneous Pathogen Detectionand Antibiotic Resistance Characterization Using SNP-based Multiplexed Oligonucleotide Ligation-PCR (MOL-PCR) by Jian Song, Po-E Li, Jason Gans, Momchilo Vuyisich, Alina Deshpande, Murray Wolinsky & P. Scott White.- Specification andVerification of Pharmacokinetic Models by YoungMin Kwon and Eunhee Kim.- Dehydron Analysis: Quantifying the Effect of Hydrophobic Groups on the Strength and Stability of Hydrogen Bonds by Christopher M. Fraser, Ariel Fernandez, L. Ridgway Scott.- Docking to large allosteric binding sites on protein surfaces byUrsula D. Ramirez, Faina Myachina, Linda Stith, & Eileen K. Jaffe.- Modeling of ATP-Sensitive Inward Rectifier Potassium Channel 11 and Inhibition Mechanism of the Natural Ligand Ellagic Acid Using Molecular Docking Studies by Alex Mathew J, Nixon Raj N, Sugappriya M, Sangeetha Priyadarshini M.- SPG1036 GPU Acceleration of Dock6's Amber Scoring Computation by Hailong Yang, Bo Li, Yongjian Wang.- Part VI: Computational Methods and Diagnostic Tools in Biomedical.- Discriminative Distance Functions and the Patient Neighborhood Graph for Clinical Decision Support by Alexey Tsymbal, Martin Huber, Shaohua Kevin Zhou.- A Scalable and Integrative System for Pathway Bioinformatics and Systems Biology by Ben Compani, Trent Su, Ivan Chang, Jianlin Cheng, Kandarp H. Shah, Thomas Whisenant, Yimeng Dou, Adriel Bergmann, Raymond Cheong, Barbara Wold, Lee Bardwell, Andre Levchenko, Pierre Baldi, Eric Mjolsness.- Registration of In Vivo Fluorescence Endomicroscopy Images based on Feature Detection by Feng Zhao, LeeSing Cheong, Feng Lin, Kemao Qian, Hock Soon Seah, and Sun-Yuan Kung.- Kinetic models for cancer imaging by Volker J Schmid.- Using Web and Social Media for Influenza Surveillance by Courtney D Corley, Diane J Cook, Armin R Mikler and Karan P Singh.- CodeSlinger: A Case Study in Domain-driven Interactive Tool Design for Biomedical Coding Scheme Exploration and Use by Natalie L. Flowers.- DigitalLung: Application of High-Performance Computing to Biological System Simulation by Greg W. Burgreen, Robert Hester, Bela Soni, David Thompson, D. Keith Walters, and Keisha Walters.- Consideration of Indices to Evaluate age-related Muscle Performance by Using Surface Electromyography by Hiroki Takada, Tomoki Shiozawa, Masaru Miyao, Yasuyuki Matsuura and Ma-sumi Takada.- A Study on Discrete Wavelet Based Noise Removal from EEG Signals by K. Asaduzzaman, M. B. I. Reaz, F. Mo
- ISBN: 978-1-4419-5912-6
- Editorial: Springer
- Encuadernacion: Cartoné
- Páginas: 533
- Fecha Publicación: 29/08/2010
- Nº Volúmenes: 1
- Idioma: Inglés